PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000019.1_g00068.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 491aa    MW: 51059.8 Da    PI: 6.307
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000019.1_g00068.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.65.4e-39111212489
                      TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                               k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++  ++s + s+++  ++
  Itr_sc000019.1_g00068.1 111 VKRPTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRGSGAALAAP 196
                              589****************************************************************9886555555555533333 PP

                      TCP  89 ...............k 89 
                                             +
  Itr_sc000019.1_g00068.1 197 lsksaqypfhstlalA 212
                              3333334444333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.791115169IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-35115215IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MELTNSQSNN IPNNSSPTSI ATAPQPFHRH QHGGARSSTA PFITSITAAA AAAAHQATHA  60
STLPSTSSAG ASTSSAAAAP PSRLVDASLA IATRSEAVVE ASEEPPPQQA VKRPTKDRHT  120
KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLH QAEPAIIAAT GTGTIPANFS  180
TLNVSLRGSG AALAAPLSKS AQYPFHSTLA LATASAHPYE ESFSHMLGFH HQHAPPQLLT  240
PSQIAETISA AAAAGGGGGD GVGGETTTED YLRKRYREDL FKDEGASSNP QGEPSGNSTS  300
PSNKQFKGGA SAATAAAAGA FPTILRQTTA PMPATTMWAV APTPSSGGTL WMLPFAAAGG  360
GGESGQALHA AAESTSGDAP SETQMWPFSN HNSNQTLQSH LQFAPRFNLP ANLDFHGGRD  420
ALPPPSHHLG LGMSDGNLGV LAAFNNAYSR TRNGLNMNSD EQQQQQQQQQ HQAQDESDEE  480
DDDNDPNNSC T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795828.11e-136PREDICTED: transcription factor TCP8-like
TrEMBLM1CBU21e-134M1CBU2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641641e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114842125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-56TCP family protein